PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113645001
Common NameGSBRNA2T00113645001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 569aa    MW: 64507.8 Da    PI: 4.9357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113645001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12316359755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +ErrRR+++N+++  Lr+l+P       +Kl+ a+iL  A++Y+k+Lq
  GSBRNA2T00113645001 316 HAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 359
                          68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-1710148IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.42E-14308361No hitNo description
PROSITE profilePS5088816.247309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-17311372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-16315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10316359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16317371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTQLIE EAGTEEFSFG  60
SCRDVMFHHP RTKSCEVLSH LPSSIPLDSG IYAETLLTNQ TGWLTESSEP GFMQETICTR  120
VLVPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDETV TINMMVGDEV ESKPYGMLLP  180
GDIHQKGSSK DEEMMNLPSP YDISADQIRL NFLPQMNDYE SQQHLKMKSD YDHHHQTLGY  240
DLPENGNNMN PFNTVAEEGM SVMGEASLLV NEQQVGNDKE MNENATGSDC SDQIDDEDDP  300
KCKKKTGKHT QAKNLHAERR RRKKLNDRLY ALRSLVPRIT KLDRASILGD AINYVKELQN  360
EAKELQDELE DNSETEDGSN RQQGGMSMNG TVLTGFHQGL SCNSNLPDMK QDVDLENCND  420
KGQEMEPQVD VAHLDGREFF VKVICEYKPG GFTRLMEALD SLGLEVTNAN TTRFLSLVSN  480
VFKVEKNDSE MVPAEHVRNS LLEITRNTSR GWHDDQMATG SIQNEKNEVG YQHYDDHHHH  540
GGHHQLHDHQ MNQSAHHHHQ HINHYQNQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302323KKKTGKHTQAKNLHAERRRRKK
2317324ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.22630.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113645001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5119910.0AJ511991.1 Brassica napus mRNA for bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136346.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_009136344.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_009136343.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLA0A078EM490.0A0A078EM49_BRANA; BnaA03g39400D protein
STRINGBra013041.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]